Qualimap 2.3 documentation
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Contents
ΒΆ
Introduction
What is Qualimap?
Installation
Requirements
Installing Qualimap on Ubuntu
Install JAVA
Install R
Install required R-packages
Citing Qualimap
Workflow
Starting a new analysis
Viewing the results of the analysis
Exporting results
Using tools
Analysis types
BAM QC
Examples
Input Parameters
Advanced parameters
Output
RNA-seq QC
Examples
Input parameters
Advanced parameters
Output
Counts QC
Example
Input Parameters
Output
Global Plots
Individual Sample Plots
Comparison Plots
Multi-sample BAM QC
Examples
Input Parameters
Output
Tools
Compute counts
Example
Input
Output
Clustering
Input Parameters
Output
Command Line Interface
General Description
BAM QC
RNA-seq QC
Multi-sample BAM QC
Counts QC
Clustering
Compute counts
Examples
Sample Data
Alignments
Annotations
Multisample BAM QC
Counts QC
Clustering
Sample Output
BAM QC
RNA-seq QC
Multisample BAM QC
Counts QC
Clustering
Frequently Asked Questions
General
Command line
Performance
Table Of Contents
Introduction
Workflow
Analysis types
Tools
Command Line Interface
Examples
Frequently Asked Questions
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